recipe whatshap

phase genomic variants using DNA sequencing reads (haplotype assembly)

Homepage

https://whatshap.readthedocs.io/

License

MIT License

Recipe

/whatshap/meta.yaml

package whatshap

(downloads) docker_whatshap

Versions

0.18-0, 0.17-0, 0.16-0, 0.15-0, 0.14.1-0, 0.13-0, 0.12-0, 0.11-0, 0.9-0

Depends biopython

>=1.73

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends networkx

Depends pyfaidx

>=0.5.5.2

Depends pysam

>=0.15

Depends python

>=3.6,<3.7.0a0

Depends pyvcf

Depends setuptools

Depends xopen

>=0.5.0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install whatshap

and update with:

conda update whatshap

or use the docker container:

docker pull quay.io/biocontainers/whatshap:<tag>

(see whatshap/tags for valid values for <tag>)