recipe anvio-minimal

An interactive analysis and visualization platform for omics data

Homepage:

https://merenlab.org/software/anvio/

Documentation:

https://anvio.org/learn/

Developer docs:

https://github.com/merenlab/anvio

License:

GPL3 / GPL-3.0-or-later

Recipe:

/anvio-minimal/meta.yaml

Links:

biotools: anvio, doi: 10.1038/s41564-020-00834-3

package anvio-minimal

versions:

8-0,  7.1-0,  7-0,  6.2-1,  6.2-0,  6.1-1,  6.1-0,  6-0,  5.5.0-0, 

8-0,  7.1-0,  7-0,  6.2-1,  6.2-0,  6.1-1,  6.1-0,  6-0,  5.5.0-0,  5.4.0-0,  5.3.0-0,  5.2.0-1,  5.2.0-0

depends bottle:

depends colored:

depends django:

depends ete3:

depends illumina-utils:

depends matplotlib-base:

depends mistune:

depends multiprocess:

depends networkx:

depends numba:

depends numpy:

<=1.24

depends pandas:

1.4.4

depends paste:

depends plotext:

depends psutil:

depends pyani:

0.2.10

depends pysam:

depends python:

>=3

depends requests:

depends rich-argparse:

depends scikit-learn:

1.2.2

depends scipy:

depends six:

depends snakemake-minimal:

5.10.0

depends sqlite:

>=3.31.1

depends statsmodels:

depends tabulate:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install anvio-minimal

and update with::

   mamba update anvio-minimal

To create a new environment, run:

mamba create --name myenvname anvio-minimal

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/anvio-minimal:<tag>

(see `anvio-minimal/tags`_ for valid values for ``<tag>``)

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