recipe bioconductor-aims

AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular Subtype

Homepage

https://bioconductor.org/packages/3.11/bioc/html/AIMS.html

License

Artistic-2.0

Recipe

/bioconductor-aims/meta.yaml

Links

biotools: aims, doi: 10.1093/jnci/dju357

This package contains the AIMS implementation. It contains necessary functions to assign the five intrinsic molecular subtypes (Luminal A, Luminal B, Her2-enriched, Basal-like, Normal-like). Assignments could be done on individual samples as well as on dataset of gene expression data.

package bioconductor-aims

Versions

1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.1-0,  1.14.0-0,  1.12.0-0,  1.10.0-0,  1.8.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• r-base >=4.0,<4.1.0a0

• r-e1071

Required By

• bioconductor-genefu

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-aims

and update with:

conda update bioconductor-aims

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-aims:<tag>

(see bioconductor-aims/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-aims/README.html)