- recipe bioconductor-chipqc
Quality metrics for ChIPseq data
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/ChIPQC.html
- License:
GPL (>= 3)
- Recipe:
- Links:
biotools: chipqc
Quality metrics for ChIPseq data.
- package bioconductor-chipqc¶
-
- Versions:
1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.2-0
,1.34.0-0
,1.30.0-0
,1.28.0-0
,1.26.0-1
,1.26.0-0
,1.24.0-0
,1.22.0-0
,1.20.0-1
,1.18.2-0
,1.18.0-0
,1.16.1-0
,1.14.0-1
,1.14.0-0
,1.12.3-0
,1.10.3-0
- Depends:
bioconductor-biobase
>=2.58.0,<2.59.0
bioconductor-biocgenerics
>=0.44.0,<0.45.0
bioconductor-biocparallel
>=1.32.0,<1.33.0
bioconductor-chipseq
>=1.48.0,<1.49.0
bioconductor-diffbind
>=3.8.0,<3.9.0
bioconductor-genomicalignments
>=1.34.0,<1.35.0
bioconductor-genomicfeatures
>=1.50.0,<1.51.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rsamtools
>=2.14.0,<2.15.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-txdb.celegans.ucsc.ce6.ensgene
>=3.2.0,<3.3.0
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg18.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.mmusculus.ucsc.mm10.knowngene
>=3.10.0,<3.11.0
bioconductor-txdb.mmusculus.ucsc.mm9.knowngene
>=3.2.0,<3.3.0
bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene
>=3.2.0,<3.3.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-chipqc
and update with:
conda update bioconductor-chipqc
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-chipqc:<tag>
(see bioconductor-chipqc/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-chipqc/README.html)