recipe bioconductor-chipqc

Quality metrics for ChIPseq data.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/ChIPQC.html

License

GPL (>= 3)

Recipe

/bioconductor-chipqc/meta.yaml

Links

biotools: chipqc

package bioconductor-chipqc

(downloads) docker_bioconductor-chipqc

Versions

1.18.2-0, 1.18.0-0, 1.16.1-0, 1.14.0-1, 1.14.0-0, 1.12.3-0, 1.10.3-0

Depends bioconductor-biobase

>=2.42.0,<2.43.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biocparallel

>=1.16.0,<1.17.0

Depends bioconductor-chipseq

>=1.32.0,<1.33.0

Depends bioconductor-diffbind

>=2.10.0,<2.11.0

Depends bioconductor-genomicalignments

>=1.18.0,<1.19.0

Depends bioconductor-genomicfeatures

>=1.34.0,<1.35.0

Depends bioconductor-genomicranges

>=1.34.0,<1.35.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-rsamtools

>=1.34.0,<1.35.0

Depends bioconductor-s4vectors

>=0.20.0,<0.21.0

Depends bioconductor-txdb.celegans.ucsc.ce6.ensgene

>=3.2.0,<3.3.0

Depends bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene

>=3.2.0,<3.3.0

Depends bioconductor-txdb.hsapiens.ucsc.hg18.knowngene

>=3.2.0,<3.3.0

Depends bioconductor-txdb.hsapiens.ucsc.hg19.knowngene

>=3.2.0,<3.3.0

Depends bioconductor-txdb.mmusculus.ucsc.mm10.knowngene

>=3.4.0,<3.5.0

Depends bioconductor-txdb.mmusculus.ucsc.mm9.knowngene

>=3.2.0,<3.3.0

Depends bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene

>=3.2.0,<3.3.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Depends r-ggplot2

Depends r-gtools

Depends r-nozzle.r1

Depends r-reshape2

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-chipqc

and update with:

conda update bioconductor-chipqc

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-chipqc:<tag>

(see bioconductor-chipqc/tags for valid values for <tag>)