- recipe bioconductor-circrnaprofiler
circRNAprofiler: An R-Based Computational Framework for the Downstream Analysis of Circular RNAs
- Homepage:
https://bioconductor.org/packages/3.16/bioc/html/circRNAprofiler.html
- License:
GPL-3
- Recipe:
R-based computational framework for a comprehensive in silico analysis of circRNAs. This computational framework allows to combine and analyze circRNAs previously detected by multiple publicly available annotation-based circRNA detection tools. It covers different aspects of circRNAs analysis from differential expression analysis, evolutionary conservation, biogenesis to functional analysis.
- package bioconductor-circrnaprofiler¶
-
- Versions:
1.12.0-0
,1.8.0-0
,1.6.0-0
,1.4.2-0
,1.4.0-0
,1.2.0-0
,1.0.0-0
- Depends:
bioconductor-annotationhub
>=3.6.0,<3.7.0
bioconductor-biostrings
>=2.66.0,<2.67.0
bioconductor-bsgenome
>=1.66.0,<1.67.0
bioconductor-bsgenome.hsapiens.ucsc.hg19
>=1.4.0,<1.5.0
bioconductor-deseq2
>=1.38.0,<1.39.0
bioconductor-edger
>=3.40.0,<3.41.0
bioconductor-genomeinfodb
>=1.34.0,<1.35.0
bioconductor-genomicranges
>=1.50.0,<1.51.0
bioconductor-gwascat
>=2.30.0,<2.31.0
bioconductor-iranges
>=2.32.0,<2.33.0
bioconductor-rtracklayer
>=1.58.0,<1.59.0
bioconductor-s4vectors
>=0.36.0,<0.37.0
bioconductor-universalmotif
>=1.16.0,<1.17.0
r-base
>=4.2,<4.3.0a0
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install bioconductor-circrnaprofiler
and update with:
conda update bioconductor-circrnaprofiler
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-circrnaprofiler:<tag>
(see bioconductor-circrnaprofiler/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-circrnaprofiler/README.html)