recipe bioconductor-csdr

Differential gene co-expression

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/csdR.html

License:

GPL-3

Recipe:

/bioconductor-csdr/meta.yaml

This package contains functionality to run differential gene co-expression across two different conditions. The algorithm is inspired by Voigt et al. 2017 and finds Conserved, Specific and Differentiated genes (hence the name CSD). This package include efficient and variance calculation by bootstrapping and Welford's algorithm.

package bioconductor-csdr

Versions:

1.4.0-0,  1.0.0-2,  1.0.0-1,  1.0.0-0

Depends:

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-glue

• r-matrixstats

• r-rcpp

• r-rhpcblasctl

• r-wgcna

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-csdr

and update with:

conda update bioconductor-csdr

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-csdr:<tag>

(see bioconductor-csdr/tags for valid values for <tag>)

Download stats

Link to this page

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