recipe bioconductor-curatedtbdata

Curation of existing 49 tuberculosis transcriptomic studies

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/curatedTBData.html

License:

MIT + file LICENSE

Recipe:

/bioconductor-curatedtbdata/meta.yaml

The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

package bioconductor-curatedtbdata

(downloads) docker_bioconductor-curatedtbdata

versions:

1.8.0-0,  1.6.0-0,  1.4.0-0,  1.0.0-1,  1.0.0-0

depends bioconductor-annotationhub:

>=3.10.0,<3.11.0

depends bioconductor-data-packages:

>=20231203

depends bioconductor-experimenthub:

>=2.10.0,<2.11.0

depends bioconductor-multiassayexperiment:

>=1.28.0,<1.29.0

depends curl:

depends r-base:

>=4.3,<4.4.0a0

depends r-rlang:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-curatedtbdata

and update with::

   mamba update bioconductor-curatedtbdata

To create a new environment, run:

mamba create --name myenvname bioconductor-curatedtbdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-curatedtbdata:<tag>

(see `bioconductor-curatedtbdata/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-curatedtbdata/README.html)