recipe bioconductor-curatedtbdata

Curation of existing 49 tuberculosis transcriptomic studies






The curatedTBData is an R package that provides standardized, curated tuberculosis(TB) transcriptomic studies. The initial release of the package contains 49 studies. The curatedTBData package allows users to access tuberculosis trancriptomic efficiently and to make efficient comparison for different TB gene signatures across multiple datasets.

package bioconductor-curatedtbdata

(downloads) docker_bioconductor-curatedtbdata



depends bioconductor-annotationhub:


depends bioconductor-data-packages:


depends bioconductor-experimenthub:


depends bioconductor-multiassayexperiment:


depends curl:

depends r-base:


depends r-rlang:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-curatedtbdata

and update with::

   mamba update bioconductor-curatedtbdata

To create a new environment, run:

mamba create --name myenvname bioconductor-curatedtbdata

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `bioconductor-curatedtbdata/tags`_ for valid values for ``<tag>``)

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