recipe bioconductor-expressionatlas

Download datasets from EMBL-EBI Expression Atlas

Homepage

https://bioconductor.org/packages/3.10/bioc/html/ExpressionAtlas.html

License

GPL (>= 3)

Recipe

/bioconductor-expressionatlas/meta.yaml

This package is for searching for datasets in EMBL-EBI Expression Atlas, and downloading them into R for further analysis. Each Expression Atlas dataset is represented as a SimpleList object with one element per platform. Sequencing data is contained in a SummarizedExperiment object, while microarray data is contained in an ExpressionSet or MAList object.

package bioconductor-expressionatlas

(downloads) docker_bioconductor-expressionatlas

Versions

1.14.0-0, 1.12.0-1, 1.10.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-expressionatlas

and update with:

conda update bioconductor-expressionatlas

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-expressionatlas:<tag>

(see bioconductor-expressionatlas/tags for valid values for <tag>)