recipe bioconductor-fgsea

The package implements an algorithm for fast gene set enrichment analysis. Using the fast algorithm allows to make more permutations and get more fine grained p-values, which allows to use accurate stantard approaches to multiple hypothesis correction.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/fgsea.html

License

MIT + file LICENCE

Recipe

/bioconductor-fgsea/meta.yaml

Links

biotools: fgsea, doi: 10.1101/060012

package bioconductor-fgsea

(downloads) docker_bioconductor-fgsea

Versions

1.10.0-0, 1.8.0-0, 1.6.0-0, 1.4.0-0, 1.2.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-fgsea

and update with:

conda update bioconductor-fgsea

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-fgsea:<tag>

(see bioconductor-fgsea/tags for valid values for <tag>)