recipe bioconductor-genomicstate

Build and access GenomicState objects for use with derfinder tools from sources like Gencode

Homepage:

https://bioconductor.org/packages/3.16/data/annotation/html/GenomicState.html

License:

Artistic-2.0

Recipe:

/bioconductor-genomicstate/meta.yaml

This package contains functions for building GenomicState objects from different annotation sources such as Gencode. It also provides access to these files at JHPCE.

package bioconductor-genomicstate

Versions:

0.99.15-2,  0.99.15-1,  0.99.15-0,  0.99.9-3,  0.99.9-2,  0.99.9-1,  0.99.9-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-annotationhub >=3.6.0,<3.7.0

• bioconductor-bumphunter >=1.40.0,<1.41.0

• bioconductor-data-packages >=20221102

• bioconductor-derfinder >=1.32.0,<1.33.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-org.hs.eg.db >=3.16.0,<3.17.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-brainflowprobes

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-genomicstate

and update with:

conda update bioconductor-genomicstate

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-genomicstate:<tag>

(see bioconductor-genomicstate/tags for valid values for <tag>)

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