recipe bioconductor-gesper

Gene-Specific Phenotype EstimatoR

Homepage

https://bioconductor.org/packages/3.14/bioc/html/gespeR.html

License

GPL-3

Recipe

/bioconductor-gesper/meta.yaml

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

package bioconductor-gesper

Versions

1.26.0-0,  1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.14.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-biomart >=2.50.0,<2.51.0

• bioconductor-cellhts2 >=2.58.0,<2.59.0

• r-base >=4.1,<4.2.0a0

• r-doparallel

• r-dplyr

• r-foreach

• r-ggplot2

• r-glmnet

• r-matrix

• r-reshape2

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gesper

and update with:

conda update bioconductor-gesper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gesper:<tag>

(see bioconductor-gesper/tags for valid values for <tag>)

Download stats

Link to this page

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