Package Recipe 'bioconductor-gesper'

recipe bioconductor-gesper

Gene-Specific Phenotype EstimatoR

Homepage:: https://bioconductor.org/packages/3.16/bioc/html/gespeR.html
License:: GPL-3
Recipe:: /bioconductor-gesper/meta.yaml

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

package bioconductor-gesper¶

Versions:

1.30.0-0, 1.26.0-0, 1.24.0-0, 1.20.0-0, 1.18.0-0, 1.16.0-1, 1.14.0-0

Depends:

bioconductor-biobase >=2.58.0,<2.59.0
bioconductor-biomart >=2.54.0,<2.55.0
bioconductor-cellhts2 >=2.62.0,<2.63.0
r-base >=4.2,<4.3.0a0
r-doparallel
r-dplyr
r-foreach
r-ggplot2
r-glmnet
r-matrix
r-reshape2

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-gesper

and update with:

conda update bioconductor-gesper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gesper:<tag>

(see bioconductor-gesper/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gesper/README.html)