recipe bioconductor-gesper

Gene-Specific Phenotype EstimatoR

Homepage

https://bioconductor.org/packages/3.11/bioc/html/gespeR.html

License

GPL-3

Recipe

/bioconductor-gesper/meta.yaml

Estimates gene-specific phenotypes from off-target confounded RNAi screens. The phenotype of each siRNA is modeled based on on-targeted and off-targeted genes, using a regularized linear regression model.

package bioconductor-gesper

Versions

1.20.0-0, 1.18.0-0, 1.16.0-1, 1.14.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-biomart >=2.44.0,<2.45.0

• bioconductor-cellhts2 >=2.52.0,<2.53.0

• r-base >=4.0,<4.1.0a0

• r-doparallel

• r-dplyr

• r-foreach

• r-ggplot2

• r-glmnet

• r-matrix

• r-reshape2

Required By

• bioconductor-eir

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-gesper

and update with:

conda update bioconductor-gesper

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-gesper:<tag>

(see bioconductor-gesper/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-gesper/README.html)