recipe bioconductor-htsfilter

Filter replicated high-throughput transcriptome sequencing data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/HTSFilter.html

License:

Artistic-2.0

Recipe:

/bioconductor-htsfilter/meta.yaml

This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.

package bioconductor-htsfilter

Versions:

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.1-0,  1.22.0-0,  1.20.0-0, 

1.38.0-0,  1.34.0-0,  1.32.0-0,  1.28.0-0,  1.26.0-0,  1.24.0-1,  1.22.1-0,  1.22.0-0,  1.20.0-0,  1.18.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocparallel >=1.32.0,<1.33.0

• bioconductor-deseq2 >=1.38.0,<1.39.0

• bioconductor-edger >=3.40.0,<3.41.0

• r-base >=4.2,<4.3.0a0

Required By:

• bioconductor-coseq

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-htsfilter

and update with:

conda update bioconductor-htsfilter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-htsfilter:<tag>

(see bioconductor-htsfilter/tags for valid values for <tag>)

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