recipe bioconductor-karyoploter

Plot customizable linear genomes displaying arbitrary data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/karyoploteR.html

License:

Artistic-2.0

Recipe:

/bioconductor-karyoploter/meta.yaml

karyoploteR creates karyotype plots of arbitrary genomes and offers a complete set of functions to plot arbitrary data on them. It mimicks many R base graphics functions coupling them with a coordinate change function automatically mapping the chromosome and data coordinates into the plot coordinates. In addition to the provided data plotting functions, it is easy to add new ones.

package bioconductor-karyoploter

Versions:

1.24.0-0,  1.20.0-0,  1.18.0-0,  1.16.0-1,  1.16.0-0,  1.14.0-0,  1.12.0-0,  1.10.4-0,  1.8.5-0

Depends:

• bioconductor-annotationdbi >=1.60.0,<1.61.0

• bioconductor-bamsignals >=1.30.0,<1.31.0

• bioconductor-biovizbase >=1.46.0,<1.47.0

• bioconductor-genomeinfodb >=1.34.0,<1.35.0

• bioconductor-genomicfeatures >=1.50.0,<1.51.0

• bioconductor-genomicranges >=1.50.0,<1.51.0

• bioconductor-iranges >=2.32.0,<2.33.0

• bioconductor-regioner >=1.30.0,<1.31.0

• bioconductor-rsamtools >=2.14.0,<2.15.0

• bioconductor-rtracklayer >=1.58.0,<1.59.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-variantannotation >=1.44.0,<1.45.0

• r-base >=4.2,<4.3.0a0

• r-bezier

• r-digest

• r-memoise

Required By:

• bioconductor-cnviz

• bioconductor-ripat

• bioconductor-multicrispr

• bioconductor-copynumberplots

• bioconductor-cnvfilter

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-karyoploter

and update with:

conda update bioconductor-karyoploter

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-karyoploter:<tag>

(see bioconductor-karyoploter/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-karyoploter/README.html)