recipe bioconductor-mousethymusageing

Single-cell Transcriptomics Data of the Ageing Mouse Thymus

Homepage:

https://bioconductor.org/packages/3.16/data/experiment/html/MouseThymusAgeing.html

License:

GPL-3

Recipe:

/bioconductor-mousethymusageing/meta.yaml

This package provides data access to counts matrices and meta-data for single-cell RNA sequencing data of thymic epithlial cells across mouse ageing using SMARTseq2 and 10X Genommics chemistries. Access is provided as a data package via ExperimentHub. It is designed to facilitate the re-use of data from Baran-Gale _et al._ in a consistent format that includes relevant and informative meta-data.

package bioconductor-mousethymusageing

Versions:

1.6.0-0,  1.2.0-1,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biocgenerics >=0.44.0,<0.45.0

• bioconductor-data-packages >=20221108

• bioconductor-experimenthub >=2.6.0,<2.7.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• curl

• r-base >=4.2,<4.3.0a0

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-mousethymusageing

and update with:

conda update bioconductor-mousethymusageing

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-mousethymusageing:<tag>

(see bioconductor-mousethymusageing/tags for valid values for <tag>)

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