recipe bioconductor-nanotubes

Mouse nanotube CAGE data

Homepage:

https://bioconductor.org/packages/3.18/data/experiment/html/nanotubes.html

License:

GPL-3

Recipe:

/bioconductor-nanotubes/meta.yaml

Cap Analysis of Gene Expression (CAGE) data from "Identification of Gene Transcription Start Sites and Enhancers Responding to Pulmonary Carbon Nanotube Exposure in Vivo" by Bornholdt et al. supplied as CAGE Transcription Start Sites (CTSSs).

package bioconductor-nanotubes

(downloads) docker_bioconductor-nanotubes

versions:
1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0, 

1.22.0-0,  1.18.0-0,  1.16.0-0,  1.14.0-0,  1.10.0-1,  1.10.0-0,  1.8.0-0,  1.6.0-1,  1.6.0-0,  1.5.0-0,  1.4.0-0,  1.2.0-0,  1.0.0-1

depends bioconductor-data-packages:

>=20241103

depends curl:

depends r-base:

>=4.4,<4.5.0a0

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-nanotubes

and update with::

   mamba update bioconductor-nanotubes

To create a new environment, run:

mamba create --name myenvname bioconductor-nanotubes

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-nanotubes:<tag>

(see `bioconductor-nanotubes/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-nanotubes/README.html)