- recipe bioconductor-nullrangesdata
ExperimentHub datasets for the nullranges package
Provides datasets for the nullranges package vignette, in particular example datasets for DNase hypersensitivity sites (DHS), CTCF binding sites, and CTCF genomic interactions. These are used to demonstrate generation of null hypothesis feature sets, either through block bootstrapping or matching, in the nullranges vignette. For more details, see the data object man pages, and the R scripts for object construction provided within the package.
- package bioconductor-nullrangesdata¶
- depends bioconductor-data-packages:
- depends bioconductor-experimenthub:
- depends bioconductor-genomicranges:
- depends bioconductor-interactionset:
- depends curl:
- depends r-base:
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install bioconductor-nullrangesdata and update with:: mamba update bioconductor-nullrangesdata
To create a new environment, run:
mamba create --name myenvname bioconductor-nullrangesdata
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).
Alternatively, use the docker container:
docker pull quay.io/biocontainers/bioconductor-nullrangesdata:<tag> (see `bioconductor-nullrangesdata/tags`_ for valid values for ``<tag>``)