recipe bioconductor-redseq

The package includes functions to build restriction enzyme cut site (RECS) map, distribute mapped sequences on the map with five different approaches, find enriched/depleted RECSs for a sample, and identify differentially enriched/depleted RECSs between samples.

Homepage

https://bioconductor.org/packages/3.9/bioc/html/REDseq.html

License

GPL (>=2)

Recipe

/bioconductor-redseq/meta.yaml

package bioconductor-redseq

(downloads) docker_bioconductor-redseq

Versions

1.28.0-0

Depends bioconductor-annotationdbi

>=1.44.0,<1.45.0

Depends bioconductor-biocgenerics

>=0.28.0,<0.29.0

Depends bioconductor-biostrings

>=2.50.0,<2.51.0

Depends bioconductor-bsgenome

>=1.50.0,<1.51.0

Depends bioconductor-bsgenome.celegans.ucsc.ce2

>=1.4.0,<1.5.0

Depends bioconductor-chippeakanno

>=3.16.0,<3.17.0

Depends bioconductor-iranges

>=2.16.0,<2.17.0

Depends bioconductor-multtest

>=2.38.0,<2.39.0

Depends r-base

>=3.5.1,<3.5.2.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-redseq

and update with:

conda update bioconductor-redseq

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-redseq:<tag>

(see bioconductor-redseq/tags for valid values for <tag>)