recipe bioconductor-sctgif

Cell type annotation for unannotated single-cell RNA-Seq data

Homepage:

https://bioconductor.org/packages/3.16/bioc/html/scTGIF.html

License:

Artistic-2.0

Recipe:

/bioconductor-sctgif/meta.yaml

scTGIF connects the cells and the related gene functions without cell type label.

package bioconductor-sctgif

Versions:

1.12.0-0,  1.8.0-2,  1.8.0-1,  1.8.0-0,  1.6.0-0,  1.4.0-1,  1.4.0-0,  1.2.0-0,  1.0.0-0

Depends:

• bioconductor-biobase >=2.58.0,<2.59.0

• bioconductor-biocstyle >=2.26.0,<2.27.0

• bioconductor-gseabase >=1.60.0,<1.61.0

• bioconductor-s4vectors >=0.36.0,<0.37.0

• bioconductor-schex >=1.12.0,<1.13.0

• bioconductor-singlecellexperiment >=1.20.0,<1.21.0

• bioconductor-summarizedexperiment >=1.28.0,<1.29.0

• libblas >=3.9.0,<4.0a0

• libgcc-ng >=12

• liblapack >=3.9.0,<4.0a0

• libstdcxx-ng >=12

• r-base >=4.2,<4.3.0a0

• r-ggplot2

• r-igraph

• r-knitr

• r-msigdbr

• r-nntensor

• r-plotly

• r-rcolorbrewer

• r-rcpp

• r-rmarkdown

• r-scales

• r-tagcloud

• r-tibble

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bioconductor-sctgif

and update with:

conda update bioconductor-sctgif

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-sctgif:<tag>

(see bioconductor-sctgif/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-sctgif/README.html)