recipe bioconductor-tmixclust

Time Series Clustering of Gene Expression with Gaussian Mixed-Effects Models and Smoothing Splines

Homepage

https://bioconductor.org/packages/3.11/bioc/html/TMixClust.html

License

GPL (>=2)

Recipe

/bioconductor-tmixclust/meta.yaml

Implementation of a clustering method for time series gene expression data based on mixed-effects models with Gaussian variables and non-parametric cubic splines estimation. The method can robustly account for the high levels of noise present in typical gene expression time series datasets.

package bioconductor-tmixclust

(downloads) docker_bioconductor-tmixclust

Versions

1.10.0-01.8.0-01.6.0-11.4.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-tmixclust

and update with:

conda update bioconductor-tmixclust

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-tmixclust:<tag>

(see bioconductor-tmixclust/tags for valid values for <tag>)