recipe delly

Structural variant discovery by integrated paired-end and split-read analysis

Homepage

https://github.com/dellytools/delly

License

BSD / BSD-3-Clause

Recipe

/delly/meta.yaml

package delly

Versions

0.8.7-0,  0.8.6-0,  0.8.5-0,  0.8.3-1,  0.8.3-0,  0.8.2-1,  0.8.2-0,  0.8.1-3,  0.8.1-2, 

0.8.7-0,  0.8.6-0,  0.8.5-0,  0.8.3-1,  0.8.3-0,  0.8.2-1,  0.8.2-0,  0.8.1-3,  0.8.1-2,  0.8.1-1,  0.8.1-0,  0.7.9-4,  0.7.8-4,  0.7.8-3,  0.7.8-2,  0.7.8-1,  0.7.8-0,  0.7.7-1,  0.7.6-0,  0.7.2-1,  0.7.2-0

Depends

• boost-cpp >=1.70.0,<1.70.1.0a0

• bzip2 >=1.0.8,<2.0a0

• htslib >=1.10.2,<1.11.0a0

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• zlib >=1.2.11,<1.3.0a0

Required By

• pathogen-profiler

• tb-profiler

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install delly

and update with:

conda update delly

or use the docker container:

docker pull quay.io/biocontainers/delly:<tag>

(see delly/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/delly/README.html)