recipe delly

Structural variant discovery by integrated paired-end and split-read analysis.

Homepage:

https://github.com/dellytools/delly

Documentation:

https://github.com/dellytools/delly/blob/v1.3.3/README.md

License:

BSD / BSD-3-Clause

Recipe:

/delly/meta.yaml

Links:

doi: 10.1093/bioinformatics/bts378, biotools: delly2, usegalaxy-eu: delly_cnv, usegalaxy-eu: delly_classify, usegalaxy-eu: delly_lr, usegalaxy-eu: delly_call, usegalaxy-eu: delly_merge, usegalaxy-eu: delly_filter

package delly

(downloads) docker_delly

versions:
1.3.3-1,  1.3.3-0,  1.3.2-0,  1.3.1-1,  1.3.1-0,  1.2.9-0,  1.2.8-0,  1.2.6-4,  1.2.6-3, 

1.3.3-1,  1.3.3-0,  1.3.2-0,  1.3.1-1,  1.3.1-0,  1.2.9-0,  1.2.8-0,  1.2.6-4,  1.2.6-3,  1.2.6-2,  1.2.6-1,  1.2.6-0,  1.1.8-0,  1.1.7-0,  1.1.6-2,  1.1.6-1,  1.1.6-0,  1.1.5-1,  1.1.5-0,  1.1.3-1,  1.1.3-0,  1.0.3-4,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  0.9.1-4,  0.9.1-3,  0.9.1-2,  0.9.1-1,  0.9.1-0,  0.8.7-1,  0.8.7-0,  0.8.6-0,  0.8.5-0,  0.8.3-1,  0.8.3-0,  0.8.2-1,  0.8.2-0,  0.8.1-3,  0.8.1-2,  0.8.1-1,  0.8.1-0,  0.7.9-4,  0.7.8-4,  0.7.8-3,  0.7.8-2,  0.7.8-1,  0.7.8-0,  0.7.7-1,  0.7.6-0,  0.7.2-1,  0.7.2-0

depends boost-cpp:

depends bzip2:

>=1.0.8,<2.0a0

depends htslib:

>=1.21,<1.23.0a0

depends libdeflate:

>=1.22,<1.23.0a0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install delly

and update with::

   mamba update delly

To create a new environment, run:

mamba create --name myenvname delly

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/delly:<tag>

(see `delly/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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