recipe diamond

Accelerated BLAST compatible local sequence aligner

Homepage

https://github.com/bbuchfink/diamond

License

AGPL / AGPL-3.0

Recipe

/diamond/meta.yaml

Links

biotools: Diamond, doi: 10.1038/nmeth.3176

package diamond

Versions

0.9.32-0, 0.9.30-0, 0.9.29-0, 0.9.28-0, 0.9.26-0, 0.9.25-0, 0.9.24-1, 0.9.24-0, 0.9.22-0, 0.9.21-1, 0.9.19-3, 0.9.19-2, 0.9.19-1, 0.9.14-2, 0.9.14-1, 0.9.14-0, 0.9.10-3, 0.9.10-2, 0.9.10-1, 0.9.10-0, 0.8.36-4, 0.8.36-3, 0.8.36-2, 0.8.36-1, 0.8.36-0, 0.8.31-2, 0.8.31-1, 0.8.31-0, 0.8.30-2, 0.8.30-1, 0.8.30-0, 0.8.29-4, 0.8.29-3, 0.8.29-2, 0.8.29-1, 0.8.29-0, 0.8.28-2, 0.8.28-1, 0.8.28-0, 0.8.27-3, 0.8.27-2, 0.8.27-1, 0.8.27-0, 0.8.26-2, 0.8.26-1, 0.8.26-0, 0.8.24-1, 0.8.24-0, 0.8.22-4, 0.8.22-3, 0.8.22-2, 0.8.22-1, 0.8.9-1, 0.7.12-0, 0.7.10-1, 0.7.10-0

Depends

• boost-cpp >=1.70.0,<1.70.1.0a0

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• zlib >=1.2.11,<1.3.0a0

Required By

• orthofinder

• phylophlan

• metawatt

• rgi

• refinem

• proteinortho

• pylprotpredictor

• singlem

• super-focus

• srax

• enrichm

• antismash

• pygmes

• augustus

• comparem

• cat

• das_tool

• panx

• platon

• anvio

• pgcgap

• funannotate

• braker2

• checkv

• eggnog-mapper

• humann2

• phastaf

• pirate

• contigtax

• virsorter

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install diamond

and update with:

conda update diamond

or use the docker container:

docker pull quay.io/biocontainers/diamond:<tag>

(see diamond/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/diamond/README.html)