recipe diamond

Accelerated BLAST compatible local sequence aligner.

Homepage:

https://github.com/bbuchfink/diamond

Documentation:

https://github.com/bbuchfink/diamond/wiki

License:

GPL3 / GPL-3.0-or-later

Recipe:

/diamond/meta.yaml

Links:

biotools: diamond, usegalaxy-eu: bg_diamond, usegalaxy-eu: bg_diamond_makedb, usegalaxy-eu: bg_diamond_view, doi: 10.1038/s41592-021-01101-x

package diamond

(downloads) docker_diamond

versions:
2.1.12-2,  2.1.12-1,  2.1.12-0,  2.1.11-2,  2.1.11-1,  2.1.11-0,  2.1.10-3,  2.1.10-2,  2.1.10-1, 

2.1.12-2,  2.1.12-1,  2.1.12-0,  2.1.11-2,  2.1.11-1,  2.1.11-0,  2.1.10-3,  2.1.10-2,  2.1.10-1,  2.1.10-0,  2.1.9-0,  2.1.8-0,  2.1.7-1,  2.1.7-0,  2.1.6-2,  2.1.6-1,  2.1.6-0,  2.1.4-1,  2.1.4-0,  2.1.3-0,  2.1.2-0,  2.0.15-1,  2.0.15-0,  2.0.14-1,  2.0.14-0,  2.0.13-0,  2.0.12-0,  2.0.11-0,  2.0.10-0,  2.0.9-0,  2.0.8-1,  2.0.8-0,  2.0.7-0,  2.0.6-0,  2.0.5-0,  2.0.4-2,  2.0.4-1,  2.0.4-0,  2.0.2-0,  2.0.1-0,  2.0.0-0,  0.9.36-0,  0.9.35-0,  0.9.34-0,  0.9.32-0,  0.9.30-0,  0.9.29-0,  0.9.28-0,  0.9.26-0,  0.9.25-0,  0.9.24-1,  0.9.24-0,  0.9.22-0,  0.9.21-1,  0.9.19-5,  0.9.19-4,  0.9.19-3,  0.9.19-2,  0.9.19-1,  0.9.14-5,  0.9.14-4,  0.9.14-3,  0.9.14-2,  0.9.14-1,  0.9.14-0,  0.9.10-5,  0.9.10-4,  0.9.10-3,  0.9.10-2,  0.9.10-1,  0.9.10-0,  0.8.36-9,  0.8.36-8,  0.8.36-7,  0.8.36-6,  0.8.36-5,  0.8.36-4,  0.8.36-3,  0.8.36-2,  0.8.36-1,  0.8.36-0,  0.8.31-5,  0.8.31-4,  0.8.31-3,  0.8.31-2,  0.8.31-1,  0.8.31-0,  0.8.30-5,  0.8.30-4,  0.8.30-3,  0.8.30-2,  0.8.30-1,  0.8.30-0,  0.8.29-6,  0.8.29-5,  0.8.29-4,  0.8.29-3,  0.8.29-2,  0.8.29-1,  0.8.29-0,  0.8.28-5,  0.8.28-4,  0.8.28-3,  0.8.28-2,  0.8.28-1,  0.8.28-0,  0.8.27-6,  0.8.27-5,  0.8.27-4,  0.8.27-3,  0.8.27-2,  0.8.27-1,  0.8.27-0,  0.8.26-5,  0.8.26-4,  0.8.26-3,  0.8.26-2,  0.8.26-1,  0.8.26-0,  0.8.24-4,  0.8.24-3,  0.8.24-2,  0.8.24-1,  0.8.24-0,  0.8.22-7,  0.8.22-6,  0.8.22-5,  0.8.22-4,  0.8.22-3,  0.8.22-2,  0.8.22-1,  0.8.9-1,  0.7.12-0,  0.7.10-1,  0.7.10-0

depends _openmp_mutex:

>=4.5

depends libgcc:

>=13

depends libgomp:

depends libsqlite:

>=3.50.1,<4.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

requirements:

additional platforms:
osx-arm64,  linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install diamond

and update with::

   mamba update diamond

To create a new environment, run:

mamba create --name myenvname diamond

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/diamond:<tag>

(see `diamond/tags`_ for valid values for ``<tag>``)

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