recipe dropletutils-scripts

CLI scripts for the DropletUtils package

Homepage:

https://github.com/ebi-gene-expression-group/dropletutils-scripts

License:

GPL / Apache 2.0

Recipe:

/dropletutils-scripts/meta.yaml

A set of wrappers for operations associated with Aaron Lun's DropletUtils package. Functions in R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.

package dropletutils-scripts

Versions:

0.0.5-1,  0.0.5-0,  0.0.4-1,  0.0.4-0,  0.0.3-0,  0.0.2-1,  0.0.1-1,  0.0.1-0

Depends:

• bioconductor-biobase

• bioconductor-dropletutils >=1.3,<1.5

• bioconductor-singlecellexperiment

• openblas

• r-optparse

• r-workflowscriptscommon

Required By:

• scran-cli

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install dropletutils-scripts

and update with:

conda update dropletutils-scripts

or use the docker container:

docker pull quay.io/biocontainers/dropletutils-scripts:<tag>

(see dropletutils-scripts/tags for valid values for <tag>)

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