recipe fastqc-rs

A fast quality control tool for FASTQ files written in rust.

Homepage:

https://fastqc-rs.github.io

Developer docs:

https://github.com/fastqc-rs/fastqc-rs

License:

MIT

Recipe:

/fastqc-rs/meta.yaml

package fastqc-rs

versions:

0.3.4-1,  0.3.4-0,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.2-0, 

0.3.4-1,  0.3.4-0,  0.3.2-2,  0.3.2-1,  0.3.2-0,  0.3.1-1,  0.3.1-0,  0.3.0-0,  0.2.2-0,  0.2.1-2,  0.2.1-1,  0.2.1-0,  0.2.0-0,  0.1.0-0

depends bzip2:

>=1.0.8,<2.0a0

depends freetype:

>=2.12.1,<3.0a0

depends libexpat:

>=2.6.4,<3.0a0

depends libgcc:

>=13

depends liblzma:

>=5.6.3,<6.0a0

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends openssl:

>=3.4.0,<4.0a0

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install fastqc-rs

and update with::

   mamba update fastqc-rs

To create a new environment, run:

mamba create --name myenvname fastqc-rs

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/fastqc-rs:<tag>

(see `fastqc-rs/tags`_ for valid values for ``<tag>``)

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