- recipe homopolish
Homopolish is a polish tools
- Homepage:
- License:
GNU GENERAL PUBLIC LICENSE
- Recipe:
- package homopolish¶
- versions:
0.4.1-1,0.4.1-0,0.3.3-0,0.2.1-0,0.0.2-0,0.0.1-0- depends _libgcc_mutex:
>=0.1- depends _openmp_mutex:
>=4.5- depends arrow-cpp:
>=0.15.1- depends biopython:
>=1.76- depends blas:
>=2.17- depends boost:
>=1.70.0,<1.70.1.0a0- depends boost-cpp:
>=1.70.0- depends brotli:
>=1.0.9- depends brotlipy:
>=0.7.0- depends bzip2:
>=1.0.8,<2.0a0- depends c-ares:
>=1.16.1- depends ca-certificates:
>=2022.07.19- depends capnproto:
>=0.6.1- depends certifi:
>=2022.6.15- depends cffi:
>=1.14.3- depends chardet:
>=3.0.4- depends colorama:
>=0.4.4- depends cryptography:
>=3.1.1- depends curl:
>=7.78.0- depends double-conversion:
>=3.1.5- depends fastani:
1.32.*- depends feather-format:
>=0.4.1- depends gflags:
>=2.2.2- depends glog:
>=0.4.0- depends grpc-cpp:
>=1.25.0- depends gsl:
2.4.*- depends icu:
>=58.2- depends idna:
>=2.10- depends joblib:
>=0.15.1- depends k8:
>=0.2.5- depends krb5:
>=1.19.2- depends ld_impl_linux-64:
>=2.33.1- depends libblas:
>=3.8.0- depends libcblas:
>=3.8.0- depends libcurl:
>=7.78.0- depends libdeflate:
>=1.0- depends libedit:
>=3.1.20210910- depends libev:
>=4.33- depends libffi:
>=3.4.2,<3.5.0a0- depends libgcc-ng:
>=12.1.0- depends libgfortran-ng:
>=7.3.0- depends liblapack:
>=3.8.0- depends liblapacke:
>=3.8.0- depends libnghttp2:
>=1.41.0- depends libopenblas:
>=0.3.10- depends libprotobuf:
>=3.10.1- depends libssh2:
>=1.9.0- depends libstdcxx-ng:
>=12.1.0- depends llvm-openmp:
>=12.0.1- depends lz4-c:
>=1.8.3- depends mash:
2.1.1.*- depends minimap2:
>=2.17- depends more-itertools:
>=8.4.0- depends ncbi-datasets-cli:
>=13.37.2- depends ncurses:
>=6.3- depends numpy:
1.18.5.*- depends numpy-base:
1.18.5.*- depends openssl:
>=1.1.0,<=1.1.1- depends pandas:
>=0.23.4- depends parquet-cpp:
>=1.5.1- depends pyarrow:
>=0.15.1- depends pycparser:
>=2.20- depends pycurl:
>=7.43.0.6- depends pyopenssl:
>=19.1.0- depends pysam:
>=0.15.3- depends pysocks:
>=1.7.1- depends python:
- depends python-dateutil:
>=2.8.1- depends python-wget:
>=3.2- depends pytz:
>=2020.1- depends re2:
>=2019.08.01- depends readline:
>=8.1.2,<9.0a0- depends requests:
>=2.24.0- depends scikit-learn:
0.21.3.*- depends scipy:
>=1.5.2- depends setuptools:
>=50.3.0- depends six:
>=1.15.0- depends snappy:
>=1.1.8- depends sqlite:
>=3.33.0- depends thrift-cpp:
>=0.12.0- depends tk:
>=8.6.12,<8.7.0a0- depends tqdm:
>=4.63.0- depends uriparser:
>=0.9.3- depends urllib3:
>=1.25.11- depends wheel:
>=0.35.1- depends xz:
>=5.2.6,<5.3.0a0- depends zlib:
>=1.2.11,<1.3.0a0- depends zstd:
>=1.4.4- requirements:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install homopolish and update with:: mamba update homopolish
To create a new environment, run:
mamba create --name myenvname homopolish
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/homopolish:<tag> (see `homopolish/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/homopolish/README.html)
