recipe iptkl

IPTK is a library specialized in the analysis of HLA-peptidomes identified through an immunopeptidomics pipeline.

Homepage:

https://github.com/ikmb/iptoolkit

Documentation:

https://iptk.readthedocs.io/en/latest/

License:

MIT / MIT

Recipe:

/iptkl/meta.yaml

package iptkl

versions:

0.6.8-0,  0.6.5-0,  0.6.4-0

depends biopython:

depends bokeh:

depends colour:

depends dash:

depends goatools:

depends h5py:

depends holoviews:

depends logomaker:

depends lxml:

depends matplotlib-base:

depends mhcnames:

depends nglview:

depends numba:

depends pandas:

depends plotly:

depends pyopenms:

depends pyteomics:

depends python:

depends scikit-learn:

depends scipy:

depends seaborn:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install iptkl

and update with::

   mamba update iptkl

To create a new environment, run:

mamba create --name myenvname iptkl

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/iptkl:<tag>

(see `iptkl/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/iptkl/README.html)