recipe iqtree

Efficient phylogenomic software by maximum likelihood.

Homepage:

http://www.iqtree.org

Documentation:

http://www.iqtree.org/doc

Developer docs:

https://github.com/iqtree/iqtree2

License:

GPL2 / GPL-2.0-or-later

Recipe:

/iqtree/meta.yaml

Links:

biotools: iq-tree, doi: 10.1093/molbev/msu300, doi: 10.1038/nmeth.4285, doi: 10.1093/molbev/msx281, doi: 10.1093/sysbio/syae008, doi: 10.1093/molbev/msae134, usegalaxy-eu: iqtree

package iqtree

(downloads) docker_iqtree

versions:
2.3.6-0,  2.3.5-3,  2.3.5-2,  2.3.5-1,  2.3.5-0,  2.3.4-2,  2.3.4-1,  2.3.4-0,  2.3.3-0, 

2.3.6-0,  2.3.5-3,  2.3.5-2,  2.3.5-1,  2.3.5-0,  2.3.4-2,  2.3.4-1,  2.3.4-0,  2.3.3-0,  2.3.0-0,  2.2.6-0,  2.2.5-0,  2.2.3-0,  2.2.2.9-0,  2.2.2.7-2,  2.2.2.7-0,  2.2.2.3-2,  2.2.2.3-1,  2.2.2.3-0,  2.2.0.3-1,  2.2.0.3-0,  2.2.0_beta-1,  2.2.0_beta-0,  2.1.4_beta-0,  2.1.2-0,  2.0.3-1,  2.0.3-0,  1.6.12-1,  1.6.12-0,  1.6.11.1-0,  1.6.11-0,  1.6.10-0,  1.6.9-1,  1.6.9-0,  1.6.8-0,  1.6.7.2-0,  1.6.7.1-0,  1.6.7-1,  1.6.7-0,  1.6.6-0,  1.5.5-2,  1.5.5-1,  1.5.5-0,  1.5.3-2,  1.5.3-1,  1.5.3-0

depends _openmp_mutex:

>=4.5

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install iqtree

and update with::

   mamba update iqtree

To create a new environment, run:

mamba create --name myenvname iqtree

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/iqtree:<tag>

(see `iqtree/tags`_ for valid values for ``<tag>``)

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Link to this page

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