recipe kaiju

Fast and sensitive taxonomic classification for metagenomics

Homepage:

https://kaiju.binf.ku.dk/

Developer docs:

https://github.com/bioinformatics-centre/kaiju

License:

GPL3 / GPL-3.0-or-later

Recipe:

/kaiju/meta.yaml

Links:

biotools: kaiju, doi: 10.1038/ncomms11257

package kaiju

versions:

1.10.1-1,  1.10.1-0,  1.10.0-0,  1.9.2-3,  1.9.2-2,  1.9.2-1,  1.9.2-0,  1.9.0-1,  1.9.0-0, 

1.10.1-1,  1.10.1-0,  1.10.0-0,  1.9.2-3,  1.9.2-2,  1.9.2-1,  1.9.2-0,  1.9.0-1,  1.9.0-0,  1.8.2-1,  1.8.2-0,  1.8.1-1,  1.8.1-0,  1.8.0-0,  1.7.4-1,  1.7.4-0,  1.7.3-1,  1.7.3-0,  1.7.2-0,  1.7.1-0,  1.7.0-2,  1.6.3-2,  1.6.3-1,  1.6.3-0,  1.6.2-1,  1.6.2-0,  1.6.1-1,  1.6.1-0,  1.5.0-0,  1.4.5-0,  1.4.4-3,  1.4.4-2,  1.4.4-1,  1.4.4-0,  1.0-0

depends curl:

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends perl:

depends python:

depends wget:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install kaiju

and update with::

   mamba update kaiju

To create a new environment, run:

mamba create --name myenvname kaiju

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/kaiju:<tag>

(see `kaiju/tags`_ for valid values for ``<tag>``)

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