recipe knot-asm-analysis

KNOT: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies.

Homepage:

https://github.com/natir/knot

License:

MIT / MIT

Recipe:

/knot-asm-analysis/meta.yaml

package knot-asm-analysis

Versions:

1.3.0-0

Depends:

• biopython >=1.72

• fpa >=0.5

• gfapy >=1.0.0

• jinja2 >=2.10

• minimap2

• networkx >=2.2

• python >=3

• snakemake >=5.3

• yacrd >=0.6

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install knot-asm-analysis

and update with:

conda update knot-asm-analysis

or use the docker container:

docker pull quay.io/biocontainers/knot-asm-analysis:<tag>

(see knot-asm-analysis/tags for valid values for <tag>)

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Link to this page

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