recipe knot-asm-analysis

KNOT: Knowledge Network Overlap exTraction is a tool for the investigation of fragmented long read assemblies.

Homepage:

https://github.com/natir/knot

License:

MIT / MIT

Recipe:

/knot-asm-analysis/meta.yaml

package knot-asm-analysis

versions:

1.3.0-0

depends biopython:

>=1.72

depends fpa:

>=0.5

depends gfapy:

>=1.0.0

depends jinja2:

>=2.10

depends minimap2:

depends networkx:

>=2.2

depends python:

>=3

depends snakemake:

>=5.3

depends yacrd:

>=0.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install knot-asm-analysis

and update with::

   mamba update knot-asm-analysis

To create a new environment, run:

mamba create --name myenvname knot-asm-analysis

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/knot-asm-analysis:<tag>

(see `knot-asm-analysis/tags`_ for valid values for ``<tag>``)

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