recipe mageck-vispr

MAGeCK-VISPR is a comprehensive quality control, analysis and visualization workflow for CRISPR/Cas9 screens based on MAGeCK, VISPR, Snakemake, FastQC and cutadapt.

Homepage

https://bitbucket.org/liulab/mageck-vispr

License

MIT License

Recipe

/mageck-vispr/meta.yaml

package mageck-vispr

(downloads) docker_mageck-vispr

Versions

0.5.4-1, 0.5.4-0, 0.5.3-0, 0.5.2-0, 0.4.7-0, 0.4.6-0, 0.4.5-0

Depends bioconductor-sva

>=3.15.0

Depends cutadapt

>=1.9.1

Depends fastqc

>=0.11.4

Depends jinja2

>=2.8

Depends mageck

>=0.5.3

Depends python

>=3.5,<3.6.0a0

Depends rpy2

>=2.9.4

Depends setuptools

Depends snakemake

>=3.6.0

Depends vispr

>=0.4.4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mageck-vispr

and update with:

conda update mageck-vispr

or use the docker container:

docker pull quay.io/biocontainers/mageck-vispr:<tag>

(see mageck-vispr/tags for valid values for <tag>)