Package Recipe 'mageck-vispr'

recipe mageck-vispr¶

MAGeCK-VISPR is a comprehensive quality control, analysis and visualization workflow for CRISPR/Cas9 screens based on MAGeCK, VISPR, Snakemake, FastQC and cutadapt.

Homepage: https://bitbucket.org/liulab/mageck-vispr
License: MIT License
Recipe: /mageck-vispr/meta.yaml

package mageck-vispr¶

Versions: 0.5.4-1, 0.5.4-0, 0.5.3-0, 0.5.2-0, 0.4.7-0, 0.4.6-0, 0.4.5-0
Depends bioconductor-sva: >=3.15.0
Depends cutadapt: >=1.9.1
Depends fastqc: >=0.11.4
Depends jinja2: >=2.8
Depends mageck: >=0.5.3
Depends python: >=3.5,<3.6.0a0
Depends rpy2: >=2.9.4
Depends setuptools
Depends snakemake: >=3.6.0
Depends vispr: >=0.4.4
Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mageck-vispr

and update with:

conda update mageck-vispr

or use the docker container:

docker pull quay.io/biocontainers/mageck-vispr:<tag>

(see mageck-vispr/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mageck-vispr/README.html)