recipe mageck-vispr

MAGeCK-VISPR is a comprehensive quality control, analysis and visualization workflow for CRISPR/Cas9 screens based on MAGeCK, VISPR, Snakemake, FastQC and cutadapt.

Homepage

https://bitbucket.org/liulab/mageck-vispr

License

MIT License

Recipe

/mageck-vispr/meta.yaml

package mageck-vispr

Versions

0.5.4-1, 0.5.4-0, 0.5.3-0, 0.5.2-0, 0.4.7-0, 0.4.6-0, 0.4.5-0

Depends

• bioconductor-sva >=3.15.0

• cutadapt >=1.9.1

• fastqc >=0.11.4

• jinja2 >=2.8

• mageck >=0.5.3

• python >=3.5,<3.6.0a0

• rpy2 >=2.9.4

• setuptools

• snakemake >=3.6.0

• vispr >=0.4.4

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install mageck-vispr

and update with:

conda update mageck-vispr

or use the docker container:

docker pull quay.io/biocontainers/mageck-vispr:<tag>

(see mageck-vispr/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/mageck-vispr/README.html)