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recipe ntlink

Genome assembly scaffolder using long reads and minimizers

Homepage:

https://github.com/bcgsc/ntLink

License:

GPL-3.0

Recipe:

/ntlink/meta.yaml

package ntlink¶

(downloads) docker_ntlink

Versions:
1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0, 

1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-0

Depends:
  • abyss >=2.3.0

  • btllib

  • libgcc-ng >=12

  • libstdcxx-ng >=12

  • libzlib >=1.2.13,<1.3.0a0

  • make

  • numpy

  • python >=3.8,<3.9.0a0

  • python-igraph

  • python_abi 3.8.* *_cp38

  • zlib >=1.2.13,<1.3.0a0

Required By:
  • goldrush

  • longstitch

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ntlink

and update with:

conda update ntlink

or use the docker container:

docker pull quay.io/biocontainers/ntlink:<tag>

(see ntlink/tags for valid values for <tag>)

Download stats¶

Link to this page¶

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/ntlink/README.html)
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