recipe ntlink

Genome assembly scaffolder using long reads and minimizers

Homepage:

https://github.com/bcgsc/ntLink

License:

GPL-3.0

Recipe:

/ntlink/meta.yaml

package ntlink

Versions:

1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0, 

1.3.8-0,  1.3.7-0,  1.3.6-0,  1.3.5-0,  1.3.4-0,  1.3.3-0,  1.3.2-0,  1.3.1-0,  1.3.0-0,  1.2.1-1,  1.2.1-0,  1.1.3-0,  1.1.2-1,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.1-0

Depends:

• abyss >=2.3.0

• btllib

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• make

• numpy

• python >=3.8,<3.9.0a0

• python-igraph

• python_abi 3.8.* *_cp38

• zlib >=1.2.13,<1.3.0a0

Required By:

• goldrush

• longstitch

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install ntlink

and update with:

conda update ntlink

or use the docker container:

docker pull quay.io/biocontainers/ntlink:<tag>

(see ntlink/tags for valid values for <tag>)

Download stats

Link to this page

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