recipe perl-sanger-cgp-battenberg

detect subclonality and copy number in matched NGS data

Homepage

https://github.com/cancerit/cgpBattenberg

License

GPLv3

Recipe

/perl-sanger-cgp-battenberg/meta.yaml

package perl-sanger-cgp-battenberg

(downloads) docker_perl-sanger-cgp-battenberg

Versions

1.4.1-4, 1.4.1-3, 1.4.1-2, 1.4.1-1

Depends cancerit-allelecount

Depends impute2

Depends libgcc-ng

>=4.9

Depends perl

>=5.26.2,<5.27.0a0

Depends perl-file-sharedir

Depends perl-file-sharedir-install

Depends perl-pcap

Depends perl-sanger-cgp-allelecount

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install perl-sanger-cgp-battenberg

and update with:

conda update perl-sanger-cgp-battenberg

or use the docker container:

docker pull quay.io/biocontainers/perl-sanger-cgp-battenberg:<tag>

(see perl-sanger-cgp-battenberg/tags for valid values for <tag>)