recipe phylofisher

A package for the creation, analysis, and visualization of eukaryotic phylogenomic datasets.

Homepage:

https://github.com/TheBrownLab/PhyloFisher

Documentation:

https://thebrownlab.github.io/phylofisher-pages

License:

MIT / MIT

Recipe:

/phylofisher/meta.yaml

package phylofisher

versions:

1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-1,  1.2.7-0, 

1.2.14-0,  1.2.13-0,  1.2.12-0,  1.2.11-0,  1.2.10-0,  1.2.9-0,  1.2.8-0,  1.2.7-1,  1.2.7-0,  1.2.6-0,  1.2.5-0,  1.2.3-1,  1.2.3-0,  1.2.2-0,  1.2.1-0,  1.2.0-0,  1.1.2-0

depends astral-tree:

5.7.8.*

depends biopython:

depends blast:

depends cd-hit:

4.8.1.*

depends diamond:

2.0.15.*

depends dist_est:

1.1.*

depends ete3:

depends fasttree:

2.1.10.*

depends hmmer:

3.3.*

depends mafft:

7.525.*

depends matplotlib-base:

depends pandas:

depends pyqt:

depends python:

3.7.10.*

depends snakemake-minimal:

6.1.*

depends trimal:

1.4.1.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install phylofisher

and update with::

   mamba update phylofisher

To create a new environment, run:

mamba create --name myenvname phylofisher

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/phylofisher:<tag>

(see `phylofisher/tags`_ for valid values for ``<tag>``)

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Link to this page

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