Implements the necessary distributions and parameter estimation procedures for a model of amplification and high-troughput sequencing. The model is based on a mechanistic model of PCR amplification as a Galton-Watson branching process, and on Poissonan sampling to model high-throughput sequencing.

Home http://www.cibiv.at/~pflug_/trumicount
Versions 0.9.10, 0.9.9
License AGPLv3
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/r-gwpcr


With an activated Bioconda channel (see 2. Set up channels), install with:

conda install r-gwpcr

and update with:

conda update r-gwpcr


A Docker container is available at https://quay.io/repository/biocontainers/r-gwpcr.