recipe r-swamp

Collection of functions to connect the structure of the data with the information on the samples. Three types of associations are covered: 1. linear model of principal components. 2. hierarchical clustering analysis. 3. distribution of features-sample annotation associations. Additionally, the inter-relation between sample annotations can be analyzed. Simple methods are provided for the correction of batch effects and removal of principal components.

Homepage:

https://CRAN.R-project.org/package=swamp

License:

GPL3 / GPL (>= 2)

Recipe:

/r-swamp/meta.yaml

package r-swamp

Versions:

1.5.1-4,  1.5.1-3,  1.5.1-2,  1.5.1-1,  1.5.1-0,  1.4.1-3,  1.4.1-2,  1.4.1-1,  1.4.1-0, 

1.5.1-4,  1.5.1-3,  1.5.1-2,  1.5.1-1,  1.5.1-0,  1.4.1-3,  1.4.1-2,  1.4.1-1,  1.4.1-0,  1.3.1-0

Depends:

• bioconductor-impute

• r-amap

• r-base >=4.2,<4.3.0a0

• r-gplots

• r-mass

Required By:

• bioconductor-dexma

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install r-swamp

and update with:

conda update r-swamp

or use the docker container:

docker pull quay.io/biocontainers/r-swamp:<tag>

(see r-swamp/tags for valid values for <tag>)

Download stats

Link to this page

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