recipe seq-to-first-iso

Compute first two isotopologues intensity from peptide sequence

Homepage:

https://github.com/pierrepo/seq-to-first-iso

Documentation:

https://seq-to-first-iso.readthedocs.io/

License:

BSD / BSD 3-Clause License

Recipe:

/seq-to-first-iso/meta.yaml

Seq-to-first-iso is a Python package that computes isotopologues M0 and M1 of peptides with a 99.99 % 12C enrichment for quantification by SLIM-labeling. It simulates auxotrophies by differentiating labelled and unlabelled amino acids.

package seq-to-first-iso

(downloads) docker_seq-to-first-iso

versions:

1.1.0-0,  1.0.0-0,  0.5.1-0,  0.5.0-0

depends pandas:

depends pyteomics:

depends python:

>=3.6

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install seq-to-first-iso

and update with::

   mamba update seq-to-first-iso

To create a new environment, run:

mamba create --name myenvname seq-to-first-iso

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/seq-to-first-iso:<tag>

(see `seq-to-first-iso/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

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