recipe surpyvor

Evaluating, merging and plotting SV vcf files

Homepage:

https://github.com/wdecoster/surpyvor

License:

MIT / MIT License

Recipe:

/surpyvor/meta.yaml

Links:

doi: 10.1101/gr.244939.118

package surpyvor

versions:

0.15.0-0,  0.14.0-0,  0.13.0-0,  0.12.0-0,  0.11.0-0,  0.10.0-0,  0.8.1-1,  0.8.1-0,  0.6.0-1, 

0.15.0-0,  0.14.0-0,  0.13.0-0,  0.12.0-0,  0.11.0-0,  0.10.0-0,  0.8.1-1,  0.8.1-0,  0.6.0-1,  0.6.0-0,  0.5.0-1,  0.5.0-0

depends bcftools:

depends cyvcf2:

depends htslib:

depends matplotlib-base:

depends matplotlib-venn:

depends numpy:

depends python:

>=3

depends survivor:

depends upsetplot:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install surpyvor

and update with::

   mamba update surpyvor

To create a new environment, run:

mamba create --name myenvname surpyvor

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/surpyvor:<tag>

(see `surpyvor/tags`_ for valid values for ``<tag>``)

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